Assignment 4
Due: Friday, November 13
For this assignment you will experiment with Principal Component Analysis as a
dimensionality reduction approach to assist in clustering highdimensional data.
You will also experiment with itembased recommendation
for a joke recommender system.
 PCA for Reduced Dimensionality in Clustering [Dataset:
segmentation_data.zip]
For this problem you will use an image segmentation data set
for clustering. You will experiment with using PCA as an approach to reduce
dimensionality and noise in the data. You will compare the results of
clustering the data with and without PCA using the provided image class
assignments as the ground truth. The data set is divided into three files.
The file "segmentation_data.txt" contains data about images with each line
corresponding to one image. Each image is represented by 19 features (these
are the columns in the data and correspond to the feature names in the file
"segmentation_names.txt". The file "segmentation_classes.txt" contains the
class labels (the type of image) and a numeric class label for each of the
corresponding images in the data file. After clustering the image data, you
will use the class labels to measure completeness and homogeneity of the
generated clusters. The data set used in this problem is based on the
Image Segmentation data set at the UCI Machine Learning Repository.
Your tasks in this problem are the following:
 Load in the image data matrix (with rows
as images and columns as features). Also load in the numeric class labels
from the segmentation class file. Using your favorite method (e.g.,
sklearn's minmax scaler), perform minmax normalization on the data matrix
so that each feature is scaled to [0,1] range.
 Using the Kmeans implementation in scikitlearn,
perform clustering on the
image data (use K = 7 in your clustering so that later we can compare the
clusters to the 7 preassigned image classes). Print the cluster centroids (use
some formatting so that they are visually understandable). To evaluate your
clusters, first perform Silhouette analysis on the clusters (compute
Silhouette values for all instances in the data, and then compute the
overall mean Silhouette value; optionally, you can provide a visaulization
of the Silhouettes). Next, compare your 7
clusters to the 7 preassigned classes by computing the
Completeness and
Homogeneity values of the generated clusters.
 Perform PCA on the normalized image data matrix. You may use the
linear algebra package in Numpy or the Decomposition module in scikitlearn
(the latter is much more efficient).
Analyze the principal components to determine the number, r, of PCs needed
to capture at least 95% of variance in the data. Provide a
plot of PC variances. Then use these r components
as features to transform the data into a reduced dimension space.
 Perform Kmeans again, but this time on
the lower dimensional transformed data. Then compare Silhouette values as
well as completeness and
Homogeneity values of the new clusters. Compare these results with those
obtained on the full data in part b.
 ItemBased Joke Recommendation [Dataset:
jokes.zip]
For this problem you will use a modified version of the itembased
recommender algorithm from Ch. 14 of Machine Learning in Action and use it
on joke ratings data based on
Jester Online Joke
Recommender System. The modified version of the code is provided in the
module itemBasedRec.py. Most of the
module will be used as is, but you will add some additional functionality.
The data set contains two files. The file "modified_jester_data.csv"
contains the ratings on 100 jokes by 1000 users (each row is a user
profile). The ratings have been normalized to be between 1 and 21 (a
20point scale), with 1 being the lowest rating. A zero indicated a missing
rating. The file "jokes.csv" contains the joke ids mapped
to the actual text of the jokes.
Your tasks in this problem are the following (please also see comments
for the function stubs in the provided module):
 Load in the joke ratings data and the joke text data into appropriate data
structures. Use the "recommend" function to provide top 5 joke
recommendations for at least 2 users. Use both standard itembased collaborative
filtering (based on the rating prediction function "standEst")
and the SVDbased version of the itembased CF (using "svdEst"
as the prediction engine) to generate these recommendations for the two users
and note the differences. You should show the text of the recommended jokes as
well as the predicted ratings for each.
 Complete the definition for the function "test".
This function iterates over all users and for
each performs evaluation (by calling the provided "cross_validate_user"
function), and returns the error information necessary to compute Mean Absolute
Error (MAE). Use this function to perform evaluation (with 20%
testratio for each user) comparing MAE results using the rating prediction function "standEst" with results
using the "svdEst"
prediction function. [Note: See comments provided in the module
for hints on accomplishing these tasks.]
 Write a new function "print_most_similar_jokes" which takes the joke ratings
data, a query joke id, a parameter k for the number similar
jokes, and a
similarity metric function, and prints the text of the query joke as well as the
texts of the top k most similar jokes based on user ratings. [Note:
For hints on how to accomplish this task, please see comments at the end of the
provided module as well as comments for the provided stub function.]
 [Extra Credit]: Develop your own
itembased collaborative filtering recommender that uses a modelbased
approach (separating the training and the prediction tasks). In the
training component, itemitem similarities for all pairs of items are
computed and stored in an appropriate data structure. Your training function
should be able to use different similarity functions (passed as a parameter)
including Cosine Similarity or Pearson Correlation. The prediction (or
estimation) function should take as parameters a target user, an item, a
value of k, and the similarities data structure and return
the predicted rating on the target item for the target user. The predicted
rating should be based on the weighted average of the target user's ratings
on k most similar items to the target item. You should test
the prediction accuracy of your estimation function (using a
crossvalidation similar to part b, above) and provide a plot of
crossvalidation accuracies across a range of values of k.
Using the best value of k, demonstrate the functionality of
your recommender by generating recommendations for several anecdotal users
(similar to part a, above).
Notes on Submission: You must submit your Jupyter Notebook
(similar to examples in class) which includes your documented code, results of
your interactions, and any discussions or explanations of the results. Please
organize your notebook so that it's clear what parts of the notebook correspond
to which problems in the assignment. Please submit the notebook in both IPYNB
and HTML formats (along with any auxiliary files). Your assignment should be submitted
via D2L.
